Publications
Show year:
Total centre publications: 1249 Publications this year: 22
Year Publication Online
2024
Kwok Van Der Giezen FM, Viljoen A, Campbell-Clause L, Dao NT, Colas Des Francs-Small C, Small I (2024) Insights into U-to-C RNA editing from the lycophyte Phylloglossum drummondii. The Plant Journal 119(1):445-459.
2024
Yang F, Vincis Pereira Sanglard L, Lee CP, Ströher E, Singh S, Oh GGK, Millar AH, Small I, Colas Des Francs-Small C (2024) Mitochondrial atp1 mRNA knockdown by a custom-designed pentatricopeptide repeat protein alters ATP synthase. Plant Physiology 194(4):2631-2647.
2024
Khan MA, Herring G, Zhu JY, Oliva M, Fourie E, Johnston B, Zhang Z, Potter J, Pineda L, Pflueger J, Swain T, Pflueger C, Lloyd JPB, Secco D, Small I, Kidd BN, Lister R (2024) CRISPRi-based circuits to control gene expression in plants. Nature Biotechnology (in press).
2024
Kwok Van Der Giezen F, Honkanen S, Colas Des Francs-Small C, Bond C, Small I (2024) Applications of Synthetic Pentatricopeptide Repeat Proteins. Plant and Cell Physiology 65(4):503-515.
2024
Swain T, Pflueger C, Freytag S, Poppe D, Pflueger J, Nguyen TV, Li JK, Lister R (2024) A modular dCas9-based recruitment platform for combinatorial epigenome editing. Nucleic Acids Research 52(1):474-491.
2024
Melville KT, Kamran M, Yao J, Costa M, Holland M, Taylor NL, Fritz G, Flematti GR, Waters MT (2024) Perception of butenolides by Bacillus subtilis via the α/β hydrolase RsbQ. Current Biology 34(3):623-631.e6.
2024
Mcquinn RP, Waters MT (2024) Apocarotenoid signals in plant development and beyond. Journal of Experimental Botany 75(4):1131-1133.
2024
Kamran M, Melville KT, Waters MT (2024) Karrikin signalling: impacts on plant development and abiotic stress tolerance. Journal of Experimental Botany 75(4):1174-1186.
2024
Considine MJ, Foyer CH (2024) Redox regulation of meristem quiescence: Outside/ in. Journal of Experimental Botany (in press).
2024
Salo W, Considine JA, Considine MJ (2024) Influence of mixed and single infection of grapevine leafroll-associated viruses and viral load on berry quality. Tree Physiology 44(5):.
2024
Jia Y, Barrero JM, Wang J, Considine MJ, Nakamura S, Li C (2024) Editorial: Seed dormancy, germination, and pre-harvest sprouting, volume II. Frontiers in Plant Science 15:1399510.
2024
Olasz B, Smithers L, Evans GL, Anandan A, Murcha MW, Vrielink A (2024) Structural analysis of the SAM domain of the Arabidopsis mitochondrial tRNA import receptor. The Journal of Biological Chemistry 300(5):107258.
2024
Coast O, Scafaro AP, Bramley H, Taylor NL, Atkin OK (2024) Photosynthesis in newly developed leaves of heat-tolerant wheat acclimates to long-term nocturnal warming. Journal of Experimental Botany 75(3):962-978.
2024
Fuchs P, Feixes-Prats E, Arruda P, Feitosa-Araújo E, Fernie AR, Grefen C, Lichtenauer S, Linka N, De Godoy Maia I, Meyer AJ, Schilasky S, Sweetlove LJ, Wege S, Weber APM, Millar AH, Keech O, Florez-Sarasa I, Barreto P, Schwarzländer M (2024) PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 2 localizes to the Golgi. Plant Physiology 194(2):623-628.
2024
Fan Y, Tcherkez G, Scafaro AP, Taylor NL, Furbank RT, Von Caemmerer S, Atkin OK (2024) Variation in leaf dark respiration among C3 and C4 grasses is associated with use of different substrates. Plant Physiology 195(2):1475-1490.
2024
Dissanayake BM, Staudinger C, Ranathunge K, Munns R, Rupasinghe TW, Taylor NL, Millar AH (2024) Metabolic adaptations leading to an enhanced lignification in wheat roots under salinity stress. Plant J (in press).
2024
Song C, Li Y, Yang M, Li T, Hou Y, Liu Y, Xu C, Liu J, Millar AH, Wang N, Li L (2024) Protein aggregation in plant mitochondria lacking Lon1 inhibits translation and induces unfolded protein responses. Plant Cell Environ (in press).
2024
Stuart T, Buckberry S, Nguyen TV, Lister R (2024) Approaches for the Analysis and Interpretation of Whole-Genome Bisulfite Sequencing Data. Methods Mol Biol 2842:391-403.
2024
Vargas-Landin DB, Pflüger J, Nguyen TV, Lister R (2024) Generation of Whole-Genome Bisulfite Sequencing Libraries for Comprehensive DNA Methylome Analysis. Methods Mol Biol 2842:383-390.
2024
Eckardt NA, Avin-Wittenberg T, Bassham DC, Chen P, Chen Q, Fang J, Genschik P, Ghifari AS, Guercio AM, Gibbs DJ, Heese M, Jarvis RP, Michaeli S, Murcha MW, Mursalimov S, Noir S, Palayam M, Peixoto B, Rodriguez PL, Schaller A, Schnittger A, Serino G, Shabek N, Stintzi A, Theodoulou FL, Üstün S, Van Wijk KJ, Wei N, Xie Q, Yu F, Zhang H (2024) The lowdown on breakdown: Open questions in plant proteolysis. Plant Cell (in press).
2024
Chenoweth JG, Colantuoni C, Striegel DA, Genzor P, Brandsma J, Blair PW, Krishnan S, Chiyka E, Fazli M, Mehta R, Considine M, Cope L, Knight AC, Elayadi A, Fox A, Hertzano R, Letizia AG, Owusu-Ofori A, Boakye I, Aduboffour AA, Ansong D, Biney E, Oduro G, Schully KL, Clark DV (2024) Gene expression signatures in blood from a West African sepsis cohort define host response phenotypes. Nat Commun 15(1):4606.
2024
Li H, Wang XM, Chen L, Ahammed GJ, Xia XJ, Shi K, Considine MJ, Yu JQ, Zhou YH (2024) Corrigendum to "Growth temperature-induced changes in biomass accumulation, photosynthesis and glutathione redox homeostasis as influenced by hydrogen peroxide in cucumber" [Plant Physiol. Biochem. 71(2013) 1-10]. Plant Physiol Biochem 213:108861.
2023
Best C, Mizrahi R, Edris R, Tang H, Zer H, Colas Des Francs-Small C, Finkel OM, Zhu H, Small ID, Ostersetzer-Biran O (2023) MSP1 encodes an essential RNA-binding pentatricopeptide repeat factor required for nad1 maturation and complex I biogenesis in Arabidopsis mitochondria. The New phytologist 238(6):2375-2392.
2023
Edera AA, Howell KA, Nevill PG, Small I, Sanchez-Puerta MV (2023) Evolution of cox2 introns in angiosperm mitochondria and efficient splicing of an elongated cox2i691 intron. Gene 869:147393.
2023
Small I, Melonek J, Bohne AV, Nickelsen J, Schmitz-Linneweber C (2023) Plant organellar RNA maturation. The Plant Cell 35(6):1727-1751.
2023
Huynh SD, Melonek J, Colas Des Francs-Small C, Bond CS, Small I (2023) A unique C-terminal domain contributes to the molecular function of Restorer-of-fertility proteins in plant mitochondria. The New phytologist 240(2):830-845.
2023
Castaños CE, Boyce MC, Bates T, Millar AH, Flematti G, Lawler NG, Grassl J (2023) Lipidomic features of honey bee and colony health during limited supplementary feeding. Insect Molecular Biology 32(6):658-675.
2023
Vincis Pereira Sanglard L, Small ID, Colas Des Francs-Small C (2023) Alteration of Mitochondrial Transcript Expression in <i>Arabidopsis thaliana</i> Using a Custom-Made Library of Pentatricopeptide Repeat Proteins. International Journal of Molecular Sciences 24(17):.
2023
Garcia A, Gaju O, Bowerman AF, Buck SA, Evans JR, Furbank RT, Gilliham M, Millar AH, Pogson BJ, Reynolds MP, Ruan YL, Taylor NL, Tyerman SD, Atkin OK (2023) Enhancing crop yields through improvements in the efficiency of photosynthesis and respiration. The New phytologist 237(1):60-77.
2023
Hanson AD, Millar AH, Nikoloski Z, Way DA (2023) Focus on respiration. Plant Physiology 191(4):2067-2069.
2023
Munns R, Millar AH (2023) Seven plant capacities to adapt to abiotic stress. Journal of Experimental Botany 74(15):4308-4323.
2023
Oh GGK, Kumari V, Millar AH, O'Leary BM (2023) Alternative oxidase 1a and 1d enable metabolic flexibility during Ala catabolism in Arabidopsis. Plant Physiology 192(4):2958-2970.
2023
Nobori T, Oliva M, Lister R, Ecker JR (2023) Multiplexed single-cell 3D spatial gene expression analysis in plant tissue using PHYTOMap. Nature Plants 9(7):1026-1033.
2023
Hermawaty D, Cahn J, Lister R, Considine MJ (2023) Systematic evaluation of chromatin immunoprecipitation sequencing to study histone occupancy in dormancy transitions of grapevine buds. Tree Physiology 43(4):675-689.
2023
Buckberry S, Liu X, Poppe D, Tan JP, Sun G, Chen J, Nguyen TV, De Mendoza A, Pflueger J, Frazer T, Vargas-Landín DB, Paynter JM, Smits N, Liu N, Ouyang JF, Rossello FJ, Chy HS, Rackham OJL, Laslett AL, Breen J, Faulkner GJ, Nefzger CM, Polo JM, Lister R (2023) Transient naive reprogramming corrects hiPS cells functionally and epigenetically. Nature 620(7975):863-872.
2023
Martin S, Poppe D, Olova N, O'Leary C, Ivanova E, Pflueger J, Dechka J, Simmons RK, Cooper HM, Reik W, Lister R, Wolvetang EJ (2023) Embryonic Stem Cell-Derived Neurons as a Model System for Epigenome Maturation during Development. Genes (Basel) 14(5):.
2023
Le XH, Millar AH (2023) The diversity of substrates for plant respiration and how to optimize their use. Plant Physiology 191(4):2133-2149.
2023
Byrt CS, Millar AH, Munns R (2023) Staple crops equipped for alkaline soils. Nature Biotechnology 41(7):911-912.
2023
Ghifari AS, Ivanova A, Berkowitz O, Whelan J, Murcha MW (2023) FTSH PROTEASE 3 facilitates Complex I degradation through a direct interaction with the Complex I subunit PSST. The Plant Cell 35(8):3092-3108.
2023
Oliva M, Lister R (2023) Exploring the identity of individual plant cells in space and time. The New phytologist 240(1):61-67.
2023
Lee HN, Chacko JV, Gonzalez Solís A, Chen KE, Barros JAS, Signorelli S, Millar AH, Vierstra RD, Eliceiri KW, Otegui MS (2023) The autophagy receptor NBR1 directs the clearance of photodamaged chloroplasts. eLIFE 12:.
2023
Waters MT, Nelson DC (2023) Karrikin perception and signalling. The New phytologist 237(5):1525-1541.
2022
Honkanen S, Small I (2022) The GENOMES UNCOUPLED1 protein has an ancient, highly conserved role but not in retrograde signalling. The New phytologist 236(1):99-113.
2022
Melonek J, Small I (2022) Triticeae genome sequences reveal huge expansions of gene families implicated in fertility restoration. Current Opinion in Plant Biology 66():102166.
2022
Mcdowell R, Small I, Bond CS (2022) Synthetic PPR proteins as tools for sequence-specific targeting of RNA. Methods (San Diego, Calif.) 208:19-26.
2022
Bikaun JM, Bates T, Bollen M, Flematti GR, Melonek J, Praveen P, Grassl J (2022) Volatile biomarkers for non-invasive detection of American foulbrood, a threat to honey bee pollination services. The Science of the total environment 845():157123.
2022
Nguyen VD, Sarić R, Burge T, Berkowitz O, Trtilek M, Whelan J, Lewsey MG, Čustović E (2022) Noninvasive imaging technologies in plant phenotyping. Trends in Plant Science 27(3):316-317.
2022
Karpinska B, Razak N, Shaw DS, Plumb W, Van De Slijke E, Stephens J, De Jaeger G, Murcha MW, Foyer CH (2022) Late Embryogenesis Abundant (LEA)5 Regulates Translation in Mitochondria and Chloroplasts to Enhance Growth and Stress Tolerance. Frontiers in Plant Science 13:875799.
2022
Gill-Hille M, Wang A, Murcha MW (2022) Presequence translocase-associated motor subunits of the mitochondrial protein import apparatus are dual-targeted to mitochondria and plastids. Frontiers in Plant Science 13:981552.
2022
Li L, Duncan O, Ganguly DR, Lee CP, Crisp PA, Wijerathna-Yapa A, Salih K, Trösch J, Pogson BJ, Millar AH (2022) Enzymes degraded under high light maintain proteostasis by transcriptional regulation in <i>Arabidopsis</i>. Proceedings of the National Academy of Sciences of the United States of America 119(20):e2121362119.
2022
Joshi J, Beaudoin GAW, Patterson JA, García-García JD, Belisle CE, Chang LY, Li L, Duncan O, Millar AH, Hanson AD (2022) Correction: Bioinformatic and experimental evidence for suicidal and catalytic plant THI4s. Biochemical Journal 479(24):2497.
2022
Cao H, Duncan O, Millar AH (2022) The molecular basis of cereal grain proteostasis. Essays Biochem 66(2):243-253.
2022
De Mendoza A, Nguyen TV, Ford E, Poppe D, Buckberry S, Pflueger J, Grimmer MR, Stolzenburg S, Bogdanovic O, Oshlack A, Farnham PJ, Blancafort P, Lister R (2022) Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability. Genome Biology 23(1):163.
2022
Wang G, Wang Y, Ni J, Li R, Zhu F, Wang R, Tian Q, Shen Q, Yang Q, Tang J, Murcha MW, Wang G (2022) An MCIA-like complex is required for mitochondrial complex I assembly and seed development in maize. Molecular Plant 15(9):1470-1487.
2022
Haywood J, Breese KJ, Zhang J, Waters MT, Bond CS, Stubbs KA, Mylne JS (2022) A fungal tolerance trait and selective inhibitors proffer HMG-CoA reductase as a herbicide mode-of-action. Nature Communications 13(1):5563.
2022
Li L, Lee CP, Ding X, Qin Y, Wijerathna-Yapa A, Broda M, Otegui MS, Millar AH (2022) Defects in autophagy lead to selective in vivo changes in turnover of cytosolic and organelle proteins in Arabidopsis. The Plant Cell 34(10):3936-3960.
2022
Ghifari AS, Teixeira PF, Kmiec B, Singh N, Glaser E, Murcha MW (2022) The dual-targeted prolyl aminopeptidase PAP1 is involved in proline accumulation in response to stress and during pollen development. Journal of Experimental Botany 73(1):78-93.
2022
Li Y, Belt K, Alqahtani SF, Saha S, Fenske R, Van Aken O, Whelan J, Millar AH, Murcha MW, Huang S (2022) The mitochondrial LYR protein SDHAF1 is required for succinate dehydrogenase activity in Arabidopsis. The Plant Journal 110(2):499-512.
2022
Ghifari AS, Murcha MW (2022) Proteolytic regulation of mitochondrial oxidative phosphorylation components in plants. Biochemical Society transactions 50(3):1119-1132.
2022
Meng Y, Varshney K, Incze N, Badics E, Kamran M, Davies SF, Oppermann LMF, Magne K, Dalmais M, Bendahmane A, Sibout R, Vogel J, Laudencia-Chingcuanco D, Bond CS, Soós V, Gutjahr C, Waters MT (2022) KARRIKIN INSENSITIVE2 regulates leaf development, root system architecture and arbuscular-mycorrhizal symbiosis in Brachypodium distachyon. The Plant Journal 109(6):1559-1574.
2022
Lloyd JPB, Ly F, Gong P, Pflueger J, Swain T, Pflueger C, Fourie E, Khan MA, Kidd BN, Lister R (2022) Synthetic memory circuits for stable cell reprogramming in plants. Nature Biotechnology 40(12):1862-1872.
2022
Gerdes P, Lim SM, Ewing AD, Larcombe MR, Chan D, Sanchez-Luque FJ, Walker L, Carleton AL, James C, Knaupp AS, Carreira PE, Nefzger CM, Lister R, Richardson SR, Polo JM, Faulkner GJ (2022) Retrotransposon instability dominates the acquired mutation landscape of mouse induced pluripotent stem cells. Nature Communications 13(1):7470.
2022
Dissanayake BM, Staudinger C, Munns R, Taylor NL, Millar AH (2022) Distinct salinity-induced changes in wheat metabolic machinery in different root tissue types. Journal of Proteomics 256:104502.
2022
Le XH, Lee CP, Monachello D, Millar AH (2022) Metabolic evidence for distinct pyruvate pools inside plant mitochondria. Nature Plants 8(6):694-705.
2022
Sepulveda C, Guzmán MA, Li Q, Villaécija-Aguilar JA, Martinez SE, Kamran M, Khosla A, Liu W, Gendron JM, Gutjahr C, Waters MT, Nelson DC (2022) KARRIKIN UP-REGULATED F-BOX 1 (KUF1) imposes negative feedback regulation of karrikin and KAI2 ligand metabolism in <i>Arabidopsis thaliana</i>. Proceedings of the National Academy of Sciences of the United States of America 119(11):e2112820119.
2022
Ivanova A, O Leary B, Signorelli S, Falconet D, Moyankova D, Whelan J, Djilianov D, Murcha MW (2022) Mitochondrial activity and biogenesis during resurrection of Haberlea rhodopensis. The New phytologist 236(3):943-957.
2022
Herring CA, Simmons RK, Freytag S, Poppe D, Moffet JJD, Pflueger J, Buckberry S, Vargas-Landin DB, Clément O, Echeverría EG, Sutton GJ, Alvarez-Franco A, Hou R, Pflueger C, Mcdonald K, Polo JM, Forrest ARR, Nowak AK, Voineagu I, Martelotto L, Lister R (2022) Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution. Cell 185(23):4428-4447.e28.
2021
Bernath-Levin K, Schmidberger J, Honkanen S, Gutmann B, Sun YK, Pullakhandam A, Colas Des Francs-Small C, Bond CS, Small I (2021) Cofactor-independent RNA editing by a synthetic S-type PPR protein. Synthetic biology (Oxford, England) 7(1):ysab034.
2021
Matros A, Houston K, Tucker MR, Schreiber M, Berger B, Aubert MK, Wilkinson LG, Witzel K, Waugh R, Seiffert U, Burton RA (2021) Genome-wide association study reveals the genetic complexity of fructan accumulation patterns in barley grain. Journal of Experimental Botany 72(7):2383-2402.
2021
Zhu L, Bloomfield KJ, Asao S, Tjoelker MG, Egerton JJG, Hayes L, Weerasinghe LK, Creek D, Griffin KL, Hurry V, Liddell M, Meir P, Turnbull MH, Atkin OK (2021) Acclimation of leaf respiration temperature responses across thermally contrasting biomes. The New phytologist 229(3):1312-1325.
2021
Tivendale ND, Fenske R, Duncan O, Millar AH (2021) In vivo homopropargylglycine incorporation enables sampling, isolation and characterization of nascent proteins from Arabidopsis thaliana. The Plant journal: for cell and molecular biology 107(4):1260-1276.
2021
Borevitz J (2021) Utilizing genomics to understand and respond to global climate change. Genome Biology and Evolution 22(1):91.
2021
Pazhamala LT, Kudapa H, Weckwerth W, Millar AH, Varshney RK (2021) Systems biology for crop improvement. The Plant Genome 14(2):e20098.
2021
Hanson AD, McCarty DR, Henry CS, Xian X, Joshi J, Patterson JA, García-García JD, Fleischmann SD, Tivendale ND, Millar AH (2021) The number of catalytic cycles in an enzyme's lifetime and why it matters to metabolic engineering. Proceedings of the National Academy of Sciences of the United States of America 118(13):undefined.
2021
Wijerathna-Yapa A, Stroeher E, Fenske R, Li L, Duncan O, Millar AH (2021) Proteomics for Autophagy Receptor and Cargo Identification in Plants. J. Proteome Research 20(1):129-138.
2021
Ye Z, Chatterton Z, Pflueger J, Damiano JA, McQuillan L, Harvey AS, Malone S, Do H, Maixner W, Schneider A, Nolan B, Wood M, Lee WS, Gillies G, Pope K, Wilson M, Lockhart PJ, Dobrovic A, Scheffer IE, Bahlo M, Leventer R, Lister R, Berkovic S, Hildebrand MS (2021) Cerebrospinal fluid liquid biopsy for detecting somatic mosaicism in brain Brain Communications
2021
Xiao Z, Chin S, White RG, Gourieroux AM, Pagay V, Tyerman SD, Schmidtke LM, Rogiers SY (2021) Vascular Connections Into the Grape Berry: The Link of Structural Investment to Seededness. Frontiers in Plant Science 12():662433.
2021
De Mendoza A, Poppe D, Buckberry S, Pflueger J, Albertin CB, Daish T, Bertrand S, De La Calle-Mustienes E, Gómez-Skarmeta JL, Nery JR, Ecker JR, Baer B, Ragsdale CW, Grützner F, Escriva H, Venkatesh B, Bogdanovic O, Lister R (2021) The emergence of the brain non-CpG methylation system in vertebrates. Nature ecology & evolution 5(3):369-378.
2021
Broda M, Khan K, O'Leary B, Pružinská A, Lee CP, Millar AH, Van Aken O (2021) Increased expression of ANAC017 primes for accelerated senescence. Plant Physiology 186(4):2205-2221.
2021
Nguyen TV, Lister R (2021) Genomic Targeting of TET Activity for Targeted Demethylation Using CRISPR/Cas9 Methods in Molecular Biology 2272:181-194.
2021
Rabanus-Wallace MT, Hackauf B, Mascher M, Lux T, Wicker T, Gundlach H, Baez M, Houben A, Mayer KFX, Guo L, Poland J, Pozniak CJ, Walkowiak S, Melonek J, Praz CR, Schreiber M, Budak H, Heuberger M, Steuernagel B, Wulff B, Börner A, Byrns B, Čížková J, Fowler DB, Fritz A, Himmelbach A, Kaithakottil G, Keilwagen J, Keller B, Konkin D, Larsen J, Li Q, Myśków B, Padmarasu S, Rawat N, Sesiz U, Biyiklioglu-Kaya S, Sharpe A, Šimková H, Small I, Swarbreck D, Toegelová H, Tsvetkova N, Voylokov AV, Vrána J, Bauer E, Bolibok-Bragoszewska H, Doležel J, Hall A, Jia J, Korzun V, Laroche A, Ma XF, Ordon F, Özkan H, Rakoczy-Trojanowska M, Scholz U, Schulman AH, Siekmann D, Stojałowski S, Tiwari VK, Spannagl M, Stein N (2021) Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nature Genetics 53(4):564-573.
2021
David R, Menezes RD, De Klerk J, Castleden IR, Hooper CM, Carneiro G, Gilliham M (2021) Identifying protein subcellular localisation in scientific literature using bidirectional deep recurrent neural network. Scientific Reports 11(1):1696.
2021
Cowley JM, Burton RA (2021) The goo-d stuff: Plantago as a myxospermous model with modern utility. The New phytologist 229(4):1917-1923.
2021
Asif MA, Garcia M, Tilbrook J, Brien C, Dowling K, Berger B, Schilling RK, Short L, Trittermann C, Gilliham M, Fleury D, Roy SJ, Pearson AS (2021) Identification of salt tolerance QTL in a wheat RIL mapping population using destructive and non-destructive phenotyping. Functional Plant Biology 48(2):131-140.
2021
Mostert-O'Neill MM, Reynolds SM, Acosta JJ, Lee DJ, Borevitz JO, Myburg AA (2021) Genomic evidence of introgression and adaptation in a model subtropical tree species, Eucalyptus grandis. Molecular ecology 30(3):625-638.
2021
Escobar-Tovar L, Sierra J, Hernández-Muñoz A, Mcquinn RP, Mathioni S, Cordoba E, Colas Des Francs-Small C, Meyers BC, Pogson B, León P (2021) Deconvoluting apocarotenoid-mediated retrograde signaling networks regulating plastid translation and leaf development. The Plant Journal 105(6):1582-1599.
2021
Lee CP, Elsässer M, Fuchs P, Fenske R, Schwarzländer M, Millar AH (2021) The versatility of plant organic acid metabolism in leaves is underpinned by mitochondrial malate-citrate exchange. The Plant Cell 33(12):3700-3720.
2021
Melonek J, Duarte J, Martin J, Beuf L, Murigneux A, Varenne P, Comadran J, Specel S, Levadoux S, Bernath-Levin K, Torney F, Pichon JP, Perez P, Small I (2021) The genetic basis of cytoplasmic male sterility and fertility restoration in wheat. Nature Communications 12(1):1036.
2021
Cao H, Duncan O, Islam S, Zhang J, Ma W, Millar AH (2021) Increased Wheat Protein Content via Introgression of an HMW Glutenin Selectively Reshapes the Grain Proteome. Molecular and Cellular Proteomics 20():100097.
2021
Liu X, Tan JP, Schröder J, Aberkane A, Ouyang JF, Mohenska M, Lim SM, Sun YBY, Chen J, Sun G, Zhou Y, Poppe D, Lister R, Clark AT, Rackham OJL, Zenker J, Polo JM (2021) Modelling human blastocysts by reprogramming fibroblasts into iBlastoids. Nature 591(7851):627-632.
2021
Le XH, Lee CP, Millar AH (2021) The mitochondrial pyruvate carrier (MPC) complex mediates one of three pyruvate-supplying pathways that sustain Arabidopsis respiratory metabolism. The Plant Cell 33(8):2776-2793.
2021
Chiconato DA, de Santana Costa MG, Balbuena TS, Munns R, Dos Santos DMM (2021) Proteomic analysis of young sugarcane plants with contrasting salt tolerance. Functional Plant Biology 48(6):588-596.
2021
Tivendale ND, Belt K, Berkowitz O, Whelan J, Millar AH, Huang S (2021) Knockdown of Succinate Dehydrogenase Assembly Factor 2 Induces Reactive Oxygen Species-Mediated Auxin Hypersensitivity Causing pH-Dependent Root Elongation. Plant and Cell Physiology 62(7):1185-1198.
2021
Schultz CJ, Goonetilleke SN, Liang J, Lahnstein J, Levin KA, Bianco-Miotto T, Burton RA, Mather DE, Chalmers KJ (2021) Analysis of Genetic Diversity in the Traditional Chinese Medicine Plant 'Kushen' (<i>Sophora flavescens</i> Ait.). Frontiers in Plant Science 12():704201.
2021
Qu Y, Guan R, Bose J, Henderson SW, Wege S, Qiu L, Gilliham M (2021) Soybean CHX-type ion transport protein GmSALT3 confers leaf Na+ exclusion via a root derived mechanism, and Cl- exclusion via a shoot derived process Plant, Cell & Environment 44(3):856-869.
2021
Sun S, Zhu J, Guo R, Whelan J, Shou H (2021) DNA methylation is involved in acclimation to iron-deficiency in rice (Oryza sativa). The Plant Journal 107(3):727-739.
2021
Kawasaki A, Dennis PG, Forstner C, Raghavendra AKH, Richardson AE, Watt M, Mathesius U, Gilliham M, Ryan PR (2021) The microbiomes on the roots of wheat (Triticum aestivum L.) and rice (Oryza sativa L.) exhibit significant differences in structure between root types and along root axes. Functional Plant Biology 48(9):871-888.
2021
Hani S, Cuyas L, David P, Secco D, Whelan J, Thibaud MC, Merret R, Mueller F, Pochon N, Javot H, Faklaris O, Maréchal E, Bertrand E, Nussaume L (2021) Live single-cell transcriptional dynamics via RNA labelling during the phosphate response in plants. Nature Plants 7(8):1050-1064.
2021
Fabres PJ, Anand L, Sai N, Pederson S, Zheng F, Stewart AA, Clements B, Lampugnani ER, Breen J, Gilliham M, Tricker P, Rodríguez López CM, David R (2021) Tissue and regional expression patterns of dicistronic tRNA-mRNA transcripts in grapevine (Vitis vinifera) and their evolutionary co-appearance with vasculature in land plants Horticulture Research 8(1):137.
2021
Royan S, Gutmann B, Colas des Francs-Small C, Honkanen S, Schmidberger J, Soet A, Sun YK, Vincis Pereira Sanglard L, Bond CS, Small I (2021) A synthetic RNA editing factor edits its target site in chloroplasts and bacteria. Communications Biology 4(1):545.
2021
Jones A, Torkel C, Stanley D, Nasim J, Borevitz J, Schwessinger B (2021) High-molecular weight DNA extraction, clean-up and size selection for long-read sequencing. PLoS ONE 16(7):e0253830.
2021
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Yao J, Scaffidi A, Meng Y, Melville KT, Komatsu A, Khosla A, Nelson DC, Kyozuka J, Flematti GR, Waters MT (2021) Desmethyl butenolides are optimal ligands for karrikin receptor proteins. The New phytologist 230(3):1003-1016.
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Hadjieconomou D, King G, Gaspar P, Mineo A, Blackie L, Ameku T, Studd C, de Mendoza A, Diao F, White BH, Brown AEX, Plaçais PY, Préat T, Miguel-Aliaga I (2020) Enteric neurons increase maternal food intake during reproduction. Nature 587(7834):455-459.
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Salih KJ, Duncan O, Li L, O'Leary B, Fenske R, Troesch J, Millar AH (2020) Impact of oxidative stress on the function, abundance and turnover of the Arabidopsis 80S cytosolic ribosome. The Plant Journal 103(1):128-139.
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Tarkowski ŁP, Signorelli S, Höfte M (2020) γ-Aminobutyric acid and related amino acids in plant immune responses: emerging mechanisms of action Plant, Cell & Environment 43(5):1103-1116.
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Eichten SR, Srivastava A, Reddiex AJ, Ganguly DR, Heussler A, Streich JC, Wilson PB, Borevitz JO (2020) Extending the Genotype in Brachypodium by Including DNA Methylation Reveals a Joint Contribution with Genetics on Adaptive Traits. G3 10(5):1629-1637.
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Cognat V, Morelle G, Megel C, Lalande S, Molinier J, Vincent T, Small I, Duchêne AM, Maréchal-Drouard L (2020) The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic. Nucleic Acids Research 48(15):8812-8813.
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Asao S, Hayes L, Aspinwall MJ, Rymer PD, Blackman C, Bryant CJ, Cullerne D, Egerton JJG, Fan Y, Innes P, Millar AH, Tucker J, Shah S, Wright IJ, Yvon-Durocher G, Tissue D, Atkin OK (2020) Leaf trait variation is similar among genotypes of Eucalyptus camaldulensis from differing climates and arises in plastic responses to the seasons rather than water availability. The New phytologist 227(3):780-793.
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Ghifari AS, Teixeira PF, Kmiec B, Pružinská A, Glaser E, Murcha MW (2020) A mitochondrial prolyl aminopeptidase PAP2 releases N-terminal proline and regulates proline homeostasis during stress response. The Plant journal: for cell and molecular biology 104(5):1182-1194.
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Petereit J, Duncan O, Murcha MW, Fenske R, Cincu E, Cahn J, Pružinská A, Ivanova A, Kollipara L, Wortelkamp S, Sickmann A, Lee J, Lister R, Millar AH, Huang S (2020) Mitochondrial CLPP2 Assists Coordination and Homeostasis of Respiratory Complexes. Plant Physiology 184(1):148-164.
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Huang S, Petereit J, Millar AH (2020) Loss of conserved mitochondrial CLPP and its functions lead to different phenotypes in plants and other organisms. Plant Signaling and Behavior 15(12):1831789.
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2020
Joshi J, Beaudoin GAW, Patterson JA, García-García JD, Belisle CE, Chang LY, Li L, Duncan O, Millar AH, Hanson AD (2020) Bioinformatic and experimental evidence for suicidal and catalytic plant THI4s. Biochemical Journal 477(11):2055-2069.
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Lim WL, Collins HM, Byrt CS, Lahnstein J, Shirley NJ, Aubert MK, Tucker MR, Peukert M, Matros A, Burton RA (2020) Overexpression of HvCslF6 in barley grain alters carbohydrate partitioning plus transfer tissue and endosperm development. Journal of Experimental Botany 71(1):138-153.
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Qiu J, Mcgaughey SA, Groszmann M, Tyerman SD, Byrt CS (2020) Phosphorylation influences water and ion channel function of AtPIP2;1. Plant, Cell & Environment 43(10):2428-2442.
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Wege S (2020) Sweet or Sour? Important Link between Nitrate Signaling and Malate Accumulation Identified in Apple. Plant Physiology 183(2):439-440.
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Gutmann B, Royan S, Schallenberg-Rüdinger M, Lenz H, Castleden IR, Mcdowell R, Vacher MA, Tonti-Filippini J, Bond CS, Knoop V, Small ID (2020) The Expansion and Diversification of Pentatricopeptide Repeat RNA-Editing Factors in Plants. Molecular Plant 13(2):215-230.
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Hrmova M, Gilliham M, Tyerman SD (2020) Plant transporters involved in combating boron toxicity: beyond 3D structures. Biochemical Society transactions 48(4):1683-1696.
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Knaupp AS, Mohenska M, Larcombe MR, Ford E, Lim SM, Wong K, Chen J, Firas J, Huang C, Liu X, Nguyen T, Sun YBY, Holmes ML, Tripathi P, Pflueger J, Rossello FJ, Schröder J, Davidson KC, Nefzger CM, Das PP, Haigh JJ, Lister R, Schittenhelm RB, Polo JM (2020) TINC- A Method to Dissect Regulatory Complexes at Single-Locus Resolution- Reveals an Extensive Protein Complex at the Nanog Promoter. Stem cell reports 15(6):1246-1259.
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Xu B, Hrmova M, Gilliham M (2020) Plant Direct 4(10):e00275.
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Freytag S, Lister R (2020) schex avoids overplotting for large single cell RNA-sequencing datasets. Bioinformatics 36(7):2291-2292.
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Hooper CM, Castleden IR, Aryamanesh N, Black K, Grasso SV, Millar AH (2020) CropPAL for discovering divergence in protein subcellular location in crops to support strategies for molecular crop breeding. The Plant Journal 104(3):812-827.
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Kamran M, Ramesh SA, Gilliham M, Tyerman SD, Bose J (2020) Role of TaALMT1 malate-GABA transporter in alkaline pH tolerance of wheat. Plant, Cell & Environment 43(10):2443-2459.
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Denisenko E, Guo BB, Jones M, Hou R, de Kock L, Lassmann T, Poppe D, Clément O, Simmons RK, Lister R, Forrest ARR (2020) Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows. Genome Biology 21(1):130.
2020
Rashid FAA, Crisp PA, Zhang Y, Berkowitz O, Pogson BJ, Day DA, Masle J, Dewar RC, Whelan J, Atkin OK, Scafaro AP (2020) Molecular and physiological responses during thermal acclimation of leaf photosynthesis and respiration in rice. Plant, cell & environment 43(3):594-610.
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Wu Y, Henderson SW, Wege S, Zheng F, Walker AR, Walker RR, Gilliham M (2020) The grapevine NaE sodium exclusion locus encodes sodium transporters with diverse transport properties and localisation J. Plant Physiol 246–247.
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Nevill PG, Zhong X, Tonti-Filippini J, Byrne M, Hislop M, Thiele K, Van Leeuwen S, Boykin LM, Small I (2020) Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics. Plant Methods 16:1.
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Liu X, Ouyang JF, Rossello FJ, Tan JP, Davidson KC, Valdes DS, Schröder J, Sun YBY, Chen J, Knaupp AS, Sun G, Chy HS, Huang Z, Pflueger J, Firas J, Tano V, Buckberry S, Paynter JM, Larcombe MR, Poppe D, Choo XY, O'Brien CM, Pastor WA, Chen D, Leichter AL, Naeem H, Tripathi P, Das PP, Grubman A, Powell DR, Laslett AL, David L, Nilsson SK, Clark AT, Lister R, Nefzger CM, Martelotto LG, Rackham OJL, Polo JM (2020) Reprogramming roadmap reveals route to human induced trophoblast stem cells. Nature 586(7827):101-107.
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Carbonnel S, Torabi S, Griesmann M, Bleek E, Tang Y, Buchka S, Basso V, Shindo M, Boyer FD, Wang TL, Udvardi M, Waters MT, Gutjahr C (2020) Lotus japonicus karrikin receptors display divergent ligand-binding specificities and organ-dependent redundancy. PLOS Genetics 16(12):e1009249.
2020
Behsaz B, Mohimani H, Gurevich A, Prjibelski A, Fisher M, Vargas F, Smarr L, Dorrestein PC, Mylne JS, Pevzner PA (2020) De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments. Cell systems 10(1):99-108.e5.
2020
de Mendoza A, Lister R, Bogdanovic O (2020) Evolution of DNA Methylome Diversity in Eukaryotes. Journal of Molecular Biology 432(6):1687-1705.
2020
Che-Othman MH, Jacoby RP, Millar AH, Taylor NL (2020) Wheat mitochondrial respiration shifts from the tricarboxylic acid cycle to the GABA shunt under salt stress. The New phytologist 225(3):1166-1180.
2020
Phan JL, Cowley JM, Neumann KA, Herliana L, O'Donovan LA, Burton RA (2020) The novel features of Plantago ovata seed mucilage accumulation, storage and release. Scientific Reports 10(1):11766.
2020
O'Leary BM, Scafaro AP, Fenske R, Duncan O, Ströher E, Petereit J, Millar AH (2020) Rubisco lysine acetylation occurs at very low stoichiometry in mature Arabidopsis leaves: implications for regulation of enzyme function. Biochemical Journal 477(19):3885-3896.
2020
Liew LC, Wang Y, Peirats-Llobet M, Berkowitz O, Whelan J, Lewsey MG (2020) Laser-Capture Microdissection RNA-Sequencing for Spatial and Temporal Tissue-Specific Gene Expression Analysis in Plants. Journal of Visualized Experiments (162):.
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O'Leary BM (2020) Another Brick in the Plant Cell Wall: Characterization of Arabidopsis CSLD3 Function in Cell Wall Synthesis. The Plant Cell 32(5):1359-1360.
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Wang H, Atkin OK, Keenan TF, Smith NG, Wright IJ, Bloomfield KJ, Kattge J, Reich PB, Prentice IC (2020) Acclimation of leaf respiration consistent with optimal photosynthetic capacity. Global change biology 26(4):2573-2583.
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Wege S (2020) Plants Increase Photosynthesis Efficiency by Lowering the Proton Gradient across the Thylakoid Membrane. Plant Physiology 182(4):1812-1813.
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Betts NS, Dockter C, Berkowitz O, Collins HM, Hooi M, Lu Q, Burton RA, Bulone V, Skadhauge B, Whelan J, Fincher GB (2020) Transcriptional and biochemical analyses of gibberellin expression and content in germinated barley grain. Journal of Experimental Botany 71(6):1870-1884.
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Hoai PTT, Tyerman SD, Schnell N, Tucker M, McGaughey SA, Qiu J, Groszmann M, Byrt CS (2020) Deciphering aquaporin regulation and roles in seed biology Journal of Experimental Botany 71(6):1763-1773.
2020
Geng FS, De La Calle-Mustienes E, Gómez-Skarmeta JL, Lister R, Bogdanovic O (2020) Depletion of Foxk transcription factors causes genome-wide transcriptional misregulation and developmental arrest in zebrafish embryos. microPublication biology 2020():.
2020
Wang S, Li L, Ying Y, Wang J, Shao JF, Yamaji N, Whelan J, Ma JF, Shou H (2020) A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localising IRO2 to the nucleus in rice. The New phytologist 225(3):1247-1260.
2020
Walkowiak S, Gao L, Monat C, Haberer G, Kassa MT, Brinton J, Ramirez-Gonzalez RH, Kolodziej MC, Delorean E, Thambugala D, Klymiuk V, Byrns B, Gundlach H, Bandi V, Siri JN, Nilsen K, Aquino C, Himmelbach A, Copetti D, Ban T, Venturini L, Bevan M, Clavijo B, Koo DH, Ens J, Wiebe K, N'Diaye A, Fritz AK, Gutwin C, Fiebig A, Fosker C, Fu BX, Accinelli GG, Gardner KA, Fradgley N, Gutierrez-Gonzalez J, Halstead-Nussloch G, Hatakeyama M, Koh CS, Deek J, Costamagna AC, Fobert P, Heavens D, Kanamori H, Kawaura K, Kobayashi F, Krasileva K, Kuo T, Mckenzie N, Murata K, Nabeka Y, Paape T, Padmarasu S, Percival-Alwyn L, Kagale S, Scholz U, Sese J, Juliana P, Singh R, Shimizu-Inatsugi R, Swarbreck D, Cockram J, Budak H, Tameshige T, Tanaka T, Tsuji H, Wright J, Wu J, Steuernagel B, Small I, Cloutier S, Keeble-Gagnère G, Muehlbauer G, Tibbets J, Nasuda S, Melonek J, Hucl PJ, Sharpe AG, Clark M, Legg E, Bharti A, Langridge P, Hall A, Uauy C, Mascher M, Krattinger SG, Handa H, Shimizu KK, Distelfeld A, Chalmers K, Keller B, Mayer KFX, Poland J, Stein N, Mccartney CA, Spannagl M, Wicker T, Pozniak CJ (2020) Multiple wheat genomes reveal global variation in modern breeding. Nature 588(7837):277-283.
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Huang S, Li L, Petereit J, Millar AH (2020) Protein turnover rates in plant mitochondria. Mitochondrion 53():57-65.
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Almudi I, Vizueta J, Wyatt CDR, de Mendoza A, Marlétaz F, Firbas PN, Feuda R, Masiero G, Medina P, Alcaina-Caro A, Cruz F, Gómez-Garrido J, Gut M, Alioto TS, Vargas-Chavez C, Davie K, Misof B, González J, Aerts S, Lister R, Paps J, Rozas J, Sánchez-Gracia A, Irimia M, Maeso I, Casares F (2020) Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings. Nature Communications 11(1):2631.
2020
Dayer S, Scharwies JD, Ramesh SA, Sullivan W, Doerflinger FC, Pagay V, Tyerman SD (2020) Comparing Hydraulics Between Two Grapevine Cultivars Reveals Differences in Stomatal Regulation Under Water Stress and Exogenous ABA Applications. Frontiers in Plant Science 11():705.
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Rashid FAA, Scafaro AP, Asao S, Fenske R, Dewar RC, Masle J, Taylor NL, Atkin OK (2020) Diel- and temperature-driven variation of leaf dark respiration rates and metabolite levels in rice. The New phytologist 228(1):56-69.
2020
Fisher MF, Payne CD, Chetty T, Crayn D, Berkowitz O, Whelan J, Rosengren KJ, Mylne JS (2020) The genetic origin of evolidine, the first cyclopeptide discovered in plants, and related orbitides. The Journal of Biological Chemistry 295(42):14510-14521.
2020
Zhou J, Cavagnaro TR, De Bei R, Nelson TM, Stephen JR, Metcalfe A, Gilliham M, Breen J, Collins C, López CMR (2020) Wine Terroir and the Soil Bacteria: An Amplicon Sequencing-Based Assessment of the Barossa Valley and Its Sub-Regions. Frontiers in microbiology 11():597944.
2020
Kenny NJ, Francis WR, Rivera-Vicéns RE, Juravel K, de Mendoza A, Díez-Vives C, Lister R, Bezares-Calderón LA, Grombacher L, Roller M, Barlow LD, Camilli S, Ryan JF, Wörheide G, Hill AL, Riesgo A, Leys SP (2020) Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri. Nature Communications 11(1):3676.
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Sun S, Yi C, Ma J, Wang S, Peirats-Llobet M, Lewsey MG, Whelan J, Shou H (2020) Analysis of Spatio-Temporal Transcriptome Profiles of Soybean (<i>Glycine max</i>) Tissues during Early Seed Development. International Journal of Molecular Sciences 21(20):.
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Coast O, Šebela D, Quiñones C, Jagadish SK (2020) Systematic determination of the reproductive growth stage most sensitive to high night temperature stress in rice (Oryza sativa) Crop Science 60(1):391-403.
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Houston K, Qiu J, Wege S, Hrmova M, Oakey H, Qu Y, Smith P, Situmorang A, Macaulay M, Flis P, Bayer M, Roy S, Halpin C, Russell J, Schreiber M, Byrt C, Gilliham M, Salt DE, Waugh R (2020) Barley sodium content is regulated by natural variants of the Na<sup>+</sup> transporter HvHKT1;5. Communications Biology 3(1):258.
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Munns R, Day DA, Fricke W, Watt M, Arsova B, Barkla BJ, Bose J, Byrt CS, Chen ZH, Foster KJ, Gilliham M, Henderson SW, Jenkins CLD, Kronzucker HJ, Miklavcic SJ, Plett D, Roy SJ, Shabala S, Shelden MC, Soole KL, Taylor NL, Tester M, Wege S, Wegner LH, Tyerman SD (2020) Energy costs of salt tolerance in crop plants. The New phytologist 225(3):1072-1090.
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Harris KD, Lloyd JPB, Domb K, Zilberman D, Zemach A (2019) DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development Epigenetics and Chromatin 12(1):62.
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Flores-Moreno H, Fazayeli F, Banerjee A, Datta A, Kattge J, Butler E, Atkin OK, Wythers K, Chen, M, Anand M, Bahn M, Burrascano S, Byun C, Cornelissen J, Craine J, Gonzalez-Melo A, Hattingh, W, Jansen S, Kraft N, Kramer K, Laughlin D, Minden V, Niinemets Ü, Onipchenko V, Peñuelas J, Soudzilovskaia N, Reich P (2019) Robustness of trait connections between multiple plant organs across environmental gradients and growth forms. Global Ecology and Biogeography 28: 1806-1826.
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